Justin,
I would venture to guess what Marrone has - that these are amphipds or copepods - they will not kill your fish or eat your corals - these are beneficial "critters" as we call them.
Your clownfish dying is likely from another problem - what are your other tank inhabitants, what are your water parameters and what kind of tank are you keeping? Reef, fish only, reef and fish? Do you have a host for your clownfish? (anemome) what kind of clown is it?
Without knowing the greater details of your tank it is hard to answer questions as the contributing factors to the death could be many.
Give us a run down on your tank parameters and maybe we can take a look.
Good luck and try hat Marrone said, get yourself a flashlight and after your tank lights (and all other lights too) are fof in the room, flash your flashlight into the tank -
Hope this helps,
House