I'm struggling with this right now and the only sure solution has been to use a filter sock. My sump has a bubble trap, but the micro-bubbles go right through it. Too much flow through the sump?
I added an upside down 90 elbow on the inside of my skimmer box. This made micro bubbles from the skimmer almost non-existant. I'm going to try to cut back the flow of the return and submerge it a bit to help with the bubbles it makes.